Illumina sequencing of Barley genome fragment library - SRA

SRX002983: Illumina sequencing of Barley genome fragment library
6 ILLUMINA (Illumina Genome Analyzer) runs: 16M spots, 574.2M bases, 435.5Mb downloads

Design: standard Illumina protocol

Submitted by: Leibniz Institute of Plant Genetics (IPK-G)

Study: Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

• SRP000229 • All experiments • All runs

show Abstracthide Abstract

Barley has one of the largest and most complex genomes of all economically important food crops. The rise of new short read sequencing technologies such as Illumina/Solexa permits such large genomes to be effectively sampled at relatively low cost. Based on the corresponding sequence reads a Mathematically Defined Repeat (MDR) index can be generated to map repetitive regions in genomic sequences.

Sample: Generic sample from Hordeum vulgare

SAMN00011084 • SRS000573 • All experiments • All runs

Organism: Hordeum vulgare

Library:

Name: KN-930

Instrument: Illumina Genome Analyzer

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

1 forward

Runs: 6 runs, 16M spots, 574.2M bases, 435.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR025104	2,544,102	91.6M	69.6Mb	2009-09-23
SRR025105	2,903,390	104.5M	77.5Mb	2009-09-23
SRR025106	2,978,495	107.2M	79.6Mb	2009-09-23
SRR025107	2,775,884	99.9M	76Mb	2009-09-23
SRR025108	2,576,710	92.8M	71.8Mb	2009-09-23
SRR025109	2,171,622	78.2M	60.9Mb	2009-09-23

ID:: 3112

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Sequence Read Archive

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